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Transcriptome analysis in fetal lungs of SRC1/SRC2 double-knockout mice

YU Ya-Qin¹, CHEN Huai-Yan¹, LIU Yuan-Yuan¹, GAO Lu^1,2,3,*

¹Department of Physiology, College of Basic Medical Sciences, Naval Medical University, Shanghai 200433, China；²Shanghai Key Laboratory for Assisted Reproduction and Reproductive Genetics, Shanghai 200433, China；³Shanghai Key Laboratory of Embryo Original Diseases, Shanghai 200433, China, Shanghai 200433, China

Abstract

Steroid receptor coactivators (SRCs) significantly increase the transcriptional activity of various steroid hormone receptors, and play an important regulatory role in a variety of physiological functions such as food intake, sleep, stress response and reproduction. Previous studies have found that pregnant mice carrying fetuses with SRC1/2 double-knockout (dKO) manifested delayed labor, partly due to the hypoplasia of fetal lungs and the decreased secretion of pulmonary surfactant protein-A (SP-A) and platelet activating factor (PAF). However, there is still a lack of systematic analysis of the changes in gene expression at the whole transcriptome level in the fetal lungs of SRC1/2 dKO mice. In this study, the SRC1KO, SRC2KO, SRC1/2 dKO and wild-type (WT) mouse fetal lung samples were collected at 18.5 days post coitus. The Illumina platform was employed for transcriptome mRNA sequencing, and then the differentially expressed genes (DEGs) were annotated and analyzed by GO and KEGG analysis. The results showed that the proportion of quality score of the sequencing data above Q30 in all samples was more than 92% and passed the quality control. Compared with WT fetal lungs, SRC1KO and SRC2KO fetal lungs had 61 and 32 DEGs, respectively; SRC1/2 dKO fetal lungs had 480, 11 and 901 DEGs compared with WT, SRC1KO and SRC2KO fetal lungs, respectively. Among these genes, Aspg, Crispld2, Eln, Ntsr2, Slc10a6 and Vgll3 were the unique DEGs of SRC1/2 dKO fetal lungs compared with other genotype mice. Real-time PCR and Western blotting verified the reliability of transcriptome sequencing results. The GO analysis of the DEGs between SRC1/2 dKO and WT mouse fetal lungs showed that the DEGs were significantly enriched in the extracellular space, extracellular region, and extracellular matrix in terms of cellular component. In the biological process, they were significantly enriched in the term of development of multiple organs. KEGG pathway analysis showed that the DEGs were mainly enriched in signaling pathways such as the complement system, extracellular matrix-receptor interactions, and protein digestion and absorption. In summary, this study comprehensively revealed the changes of gene expression in the fetal lungs of SRC1/2 dKO mice at the transcriptome level, which provides a new theoretical basis for the study of the developmental regulatory mechanism of the fetal lung during pregnancy, and the fetus-derived signals that affect the initiation of labor. 

Key words: steroid receptor coactivator; gene knockout; fetal lung development; parturition; transcriptome sequencing

Received: 　　Accepted:

Corresponding author: 高路　　E-mail: roadgao@163.com

DOI: 10.13294/j.aps.2022.0018

Citing This Article：

YU Ya-Qin, CHEN Huai-Yan, LIU Yuan-Yuan, GAO Lu. Transcriptome analysis in fetal lungs of SRC1/SRC2 double-knockout mice. Acta Physiol Sin 2022; 74 (2): 246-254 (in Chinese with English abstract).